multibind.nonequilibrium

Functions

clean_sigmas(r1, r2)

If sigmas are zero, it's best to just make them close to zero to avoid errors.

dG_standard_error(sj, si)

The standard error of the free energy difference between states i and j.

kij_standard_error(kijb, kjib, sijb, sjib, ...)

The standard error of kij from the projection method.

kji_standard_error(kijb, kjib, sijb, sjib, ...)

The standard error of kji from the projection method.

project_rates(kijb, kjib, sijb, sjib, dg[, ...])

Project input rates and standard errors onto the consistency line.

rate_matrix(filename)

Build a rate matrix from a connectivity file with rates.